IL_4DV2_087

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4DV2|1|A|C|1200, 4DV2|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_087 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.2818

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4DV2|1|A|G|1057
4DV2|1|A|G|1058
*
4DV2|1|A|U|1199
4DV2|1|A|C|1200
4DV2|1|A|A|1201
4DV2|1|A|G|1202
4DV2|1|A|C|1203

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14