Motif IL_24264.1 Version IL_24264.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3RW6_003 | 3RW6 | 0.2938 | 1 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | U | 38 | A | 40 | U | 41 | * | A | 20 | G | 21 | cWW | tHS | cWW |
| 2 | IL_8GLP_033 | 8GLP | 0.2285 | 1 | L5 | LSU rRNA | U | 512 | U | 514 | C | 515 | * | G | 646 | G | 647 | cWW | tHS | cWW | |
| 3 | IL_8B0X_047 | 8B0X | 0.0000 | 2 | Minor groove platform (H) | A | SSU rRNA | U | 1199 | U | 1202 | C | 1203 | * | G | 1057 | G | 1058 | cWW | tHS | cWW |
| 4 | IL_4LFB_045 | 4LFB | 0.1055 | 2 | Minor groove platform | A | SSU rRNA | U | 1199 | G | 1202 | C | 1203 | * | G | 1057 | G | 1058 | cWW | tHS | cWW |
| 5 | IL_8GLP_017 | 8GLP | 0.3685 | 1 | L5+L8 | LSU rRNA + 5.8S rRNA | C | 339 | G | 341 | G | 342 | * | C | 32 | G | 33 | cWW | cWW | ||
| 6 | IL_9DFE_073 | 9DFE | 0.4102 | 1 | Minor groove platform | 1A | LSU rRNA | G | 1846 | A | 1848 | G | 1849 | * | C | 1893 | C | 1894 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAU*AG | 1 |
| UUUC*GG | 1 |
| UCAUC*GG | 1 |
| UCAGC*GG | 1 |
| CCGG*CG | 1 |
| GAAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 2 |
| UU* | 1 |
| CAU* | 1 |
| CAG* | 1 |
| CG* | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (3)
- (2)
- Minor groove platform (H) (1)
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.28 | Max 0.54
Coloring options: