IL_4DV2_089

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4DV2|1|A|U|1257, 4DV2|1|A|A|1279, 4DV2|1|A|A|1280, 4DV2|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_089 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.571

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4DV2|1|A|G|1255
4DV2|1|A|A|1256
4DV2|1|A|U|1257
4DV2|1|A|G|1258
*
4DV2|1|A|C|1277
4DV2|1|A|U|1278
4DV2|1|A|A|1279
4DV2|1|A|A|1280
4DV2|1|A|U|1281
4DV2|1|A|C|1282

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14