3D structure

PDB id
4DV3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
4DV3|1|A|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV3_010 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.0775
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

4DV3|1|A|G|148
4DV3|1|A|A|149
4DV3|1|A|C|150
4DV3|1|A|A|151
4DV3|1|A|A|152
4DV3|1|A|C|153
*
4DV3|1|A|G|168
4DV3|1|A|C|169
4DV3|1|A|U|170
4DV3|1|A|A|171
4DV3|1|A|A|172
4DV3|1|A|U|173
4DV3|1|A|C|174

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0591 s