IL_4DV3_010

3D structure

PDB id

4DV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4DV3|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV3_010 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0775

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4DV3|1|A|G|148
4DV3|1|A|A|149
4DV3|1|A|C|150
4DV3|1|A|A|151
4DV3|1|A|A|152
4DV3|1|A|C|153
*
4DV3|1|A|G|168
4DV3|1|A|C|169
4DV3|1|A|U|170
4DV3|1|A|A|171
4DV3|1|A|A|172
4DV3|1|A|U|173
4DV3|1|A|C|174

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20