3D structure

PDB id
4DV3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
4DV3|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV3_033 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.0691
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

4DV3|1|A|G|683
4DV3|1|A|A|684
4DV3|1|A|G|685
4DV3|1|A|U|686
4DV3|1|A|A|687
4DV3|1|A|G|688
*
4DV3|1|A|C|699
4DV3|1|A|G|700
4DV3|1|A|C|701
4DV3|1|A|A|702
4DV3|1|A|G|703
4DV3|1|A|A|704
4DV3|1|A|U|705
4DV3|1|A|A|706
4DV3|1|A|C|707

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
ribosomal protein S11

Coloring options:


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