IL_4DV3_043

3D structure

PDB id

4DV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4DV3|1|A|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV3_043 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1563

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4DV3|1|A|U|1052
4DV3|1|A|G|1053
4DV3|1|A|C|1054
4DV3|1|A|A|1055
4DV3|1|A|U|1056
*
4DV3|1|A|A|1204
4DV3|1|A|U|1205
4DV3|1|A|G|1206

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14