3D structure

PDB id
4DV3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
CGGAUUGG*CCAUGAAG
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV3_053 not in the Motif Atlas
Geometric match to IL_4WF9_119
Geometric discrepancy: 0.2926
The information below is about IL_4WF9_119
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_00087.1
Basepair signature
cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW
Number of instances in this motif group
1

Unit IDs

4DV3|1|A|C|1303
4DV3|1|A|G|1304
4DV3|1|A|G|1305
4DV3|1|A|A|1306
4DV3|1|A|U|1307
4DV3|1|A|U|1308
4DV3|1|A|G|1309
4DV3|1|A|G|1310
*
4DV3|1|A|C|1327
4DV3|1|A|C|1328
4DV3|1|A|A|1329
4DV3|1|A|U|1330
4DV3|1|A|G|1331
4DV3|1|A|A|1332
4DV3|1|A|A|1333
4DV3|1|A|G|1334

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
ribosomal protein S13
Chain S
ribosomal protein S19
Chain U
ribosomal protein THX

Coloring options:


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