IL_4DV3_064

3D structure

PDB id

4DV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

4DV3|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV3_064 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3194

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4DV3|1|A|5MC|1407
4DV3|1|A|A|1408
4DV3|1|A|C|1409
*
4DV3|1|A|G|1491
4DV3|1|A|A|1492
4DV3|1|A|A|1493
4DV3|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12