IL_4DV4_021
3D structure
- PDB id
- 4DV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DV4_021 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.0835
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
4DV4|1|A|C|504
4DV4|1|A|G|505
4DV4|1|A|G|506
4DV4|1|A|C|507
4DV4|1|A|C|508
4DV4|1|A|A|509
4DV4|1|A|A|510
4DV4|1|A|C|511
*
4DV4|1|A|G|540
4DV4|1|A|G|541
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- ribosomal protein S4
- Chain E
- ribosomal protein S5
- Chain L
- ribosomal protein S12
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