IL_4DV6_040

3D structure

PDB id

4DV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV6_040 not in the Motif Atlas

Geometric match to IL_5F5F_001

Geometric discrepancy: 0.2812

The information below is about IL_5F5F_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

4DV6|1|A|U|1000
4DV6|1|A|A|1001
4DV6|1|A|G|1002
*
4DV6|1|A|C|1039
4DV6|1|A|U|1040
4DV6|1|A|A|1041

Current chains

Chain A

16S rRNA

Nearby chains