IL_4DV6_054

3D structure

PDB id

4DV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

4DV6|1|A|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV6_054 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0606

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4DV6|1|A|C|1399
4DV6|1|A|5MC|1400
4DV6|1|A|G|1401
*
4DV6|1|A|C|1501
4DV6|1|A|A|1502
4DV6|1|A|A|1503
4DV6|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains