IL_4DV7_035

3D structure

PDB id

4DV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

4DV7|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV7_035 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2996

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4DV7|1|A|U|921
4DV7|1|A|G|922
4DV7|1|A|A|923
*
4DV7|1|A|U|1393
4DV7|1|A|A|1394
4DV7|1|A|C|1395
4DV7|1|A|A|1396

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

ribosomal protein S5