IL_4E58_003
3D structure
- PDB id
- 4E58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of GCC(LCG)CCGC duplex containing LNA residue
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.95 Å
Loop
- Sequence
- C(LCG)CCG*C(LCG)CCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: LCG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4E58_003 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.2847
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
4E58|1|E|C|3
4E58|1|E|LCG|4
4E58|1|E|C|5
4E58|1|E|C|6
4E58|1|E|G|7
*
4E58|1|E|C|3||||7_555
4E58|1|E|LCG|4||||7_555
4E58|1|E|C|5||||7_555
4E58|1|E|C|6||||7_555
4E58|1|E|G|7||||7_555
Current chains
- Chain E
- RNA duplex containing CCG repeats
Nearby chains
- Chain C
- RNA duplex containing CCG repeats
- Chain D
- RNA duplex containing CCG repeats
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