IL_4E8V_018

3D structure

PDB id

4E8V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GCAUGGG*UUCUUACC

Length

15 nucleotides

Bulged bases

4E8V|1|A|U|13, 4E8V|1|A|A|260, 4E8V|1|A|C|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8V|1|A|G|10
4E8V|1|A|C|11
4E8V|1|A|A|12
4E8V|1|A|U|13
4E8V|1|A|G|14
4E8V|1|A|G|15
4E8V|1|A|G|16
*
4E8V|1|A|U|255
4E8V|1|A|U|256
4E8V|1|A|C|257
4E8V|1|A|U|258
4E8V|1|A|U|259
4E8V|1|A|A|260
4E8V|1|A|C|261
4E8V|1|A|C|262

Current chains

Chain A

Group IIC intron

Nearby chains