4E8V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4E8V_001 | 1/A/30:38 | T-loop with 2 stacked bulged bases | geometric HL_6JQ6_003 HL_33597.3 | |
| HL_4E8V_002 | 1/A/47:61 | Pseudoknot geometry with G-bulge | geometric HL_3IGI_002 HL_94488.1 | |
| HL_4E8V_003 | 1/A/89:94 | No text annotation | homologous HL_5J02_003 NA | |
| HL_4E8V_004 | 1/A/135:141 | No text annotation | homologous HL_5J02_004 NA | |
| HL_4E8V_005 | 1/A/178:187 | No text annotation | homologous HL_5J02_005 NA | |
| HL_4E8V_006 | 1/A/274:279 | GNRA | geometric HL_3V7E_003 NA | |
| HL_4E8V_010 | 1/A/298:320 | No text annotation | ||
| HL_4E8V_007 | 1/A/303:316 | No text annotation | ||
| HL_4E8V_008 | 1/A/338:343 | UNCG | geometric HL_3IGI_008 HL_61337.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4E8V_011 | No text annotation | ||
| HL_4E8V_009 | Other HL |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4E8V_001 | 1/A/10:14, 1/A/257:262 | No text annotation | geometric IL_3IGI_001 IL_99498.1 | |
| IL_4E8V_002 | 1/A/70:74, 1/A/113:117 | No text annotation | homologous IL_5J02_002 NA | |
| IL_4E8V_003 | 1/A/76:79, 1/A/103:111 | No text annotation | homologous IL_5J02_003 NA | |
| IL_4E8V_022 | 1/A/82:84, 1/A/99:100 | No text annotation | ||
| IL_4E8V_023 | 1/A/128:129, 1/A/234:238 | No text annotation | ||
| IL_4E8V_007 | 1/A/149:156, 1/A/221:225 | No text annotation | ||
| IL_4E8V_024 | 1/A/149:164, 1/A/213:225 | No text annotation | ||
| IL_4E8V_008 | 1/A/156:165, 1/A/212:221 | No text annotation | ||
| IL_4E8V_025 | 1/A/168:169, 1/A/197:209 | No text annotation | ||
| IL_4E8V_026 | 1/A/171:175, 1/A/190:195 | No text annotation | ||
| IL_4E8V_020 | 1/A/294:298, 1/A/320:323 | No text annotation | ||
| IL_4E8V_013 | 1/A/296:298, 1/A/320:321 | No text annotation | ||
| IL_4E8V_014 | 1/A/298:303, 1/A/316:320 | No text annotation | ||
| IL_4E8V_015 | 1/A/332:335, 1/A/346:350 | Receptor of 11-nt loop-receptor motif | geometric IL_3IGI_012 IL_95104.1 | |
| IL_4E8V_027 | 1/A/365:366, 1/A/375:378 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4E8V_018 | No text annotation | ||
| IL_4E8V_004 | Isolated non-canonical cWW with bulges | ||
| IL_4E8V_005 | Single bulged G, near cWW | ||
| IL_4E8V_006 | Isolated non-canonical cWW pair | ||
| IL_4E8V_019 | No text annotation | ||
| IL_4E8V_009 | No text annotation | ||
| IL_4E8V_010 | No text annotation | ||
| IL_4E8V_011 | Isolated non-canonical cWW pair | ||
| IL_4E8V_012 | Isolated non-canonical cWW pair | ||
| IL_4E8V_016 | No text annotation | ||
| IL_4E8V_017 | Isolated near basepair | ||
| IL_4E8V_021 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4E8V_001 | 1/A/133:135, 1/A/141:145, 1/A/229:230 | No text annotation | ||
| J5_4E8V_002 | 1/A/24:28, 1/A/40:44, 1/A/64:68, 1/A/119:123, 1/A/243:247 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_4E8V_001 | No text annotation |
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