IL_4EYA_005
3D structure
- PDB id
- 4EYA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a Plectonemic RNA Supercoil
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUUGG*CCUUGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4EYA|1|g|C|5
4EYA|1|g|C|6
4EYA|1|g|U|7
4EYA|1|g|U|8
4EYA|1|g|G|9
4EYA|1|g|G|10
*
4EYA|1|h|C|5
4EYA|1|h|C|6
4EYA|1|h|U|7
4EYA|1|h|U|8
4EYA|1|h|G|9
4EYA|1|h|G|10
Current chains
- Chain g
- RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3')
- Chain h
- RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3')
Nearby chains
- Chain B
- N utilization substance protein B homolog
- Chain H
- N utilization substance protein B homolog
- Chain f
- RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3')
- Chain j
- RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3')
- Chain q
- RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3')
- Chain r
- RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3')
Coloring options: