3D structure

PDB id
4FAW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
AUAUGAGG*UAAAU
Length
13 nucleotides
Bulged bases
4FAW|1|A|U|152, 4FAW|1|A|A|223
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_91857.1
Basepair signature
cWW-cSS-L-L-L-tSS-tHW-L-R-cWW
Number of instances in this motif group
1

Unit IDs

4FAW|1|A|A|149
4FAW|1|A|U|150
4FAW|1|A|A|151
4FAW|1|A|U|152
4FAW|1|A|G|153
4FAW|1|A|A|154
4FAW|1|A|G|155
4FAW|1|A|G|156
*
4FAW|1|A|U|221
4FAW|1|A|A|222
4FAW|1|A|A|223
4FAW|1|A|A|224
4FAW|1|A|U|225

Current chains

Chain A
Group IIC intron

Nearby chains

Chain B
5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'

Coloring options:

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