IL_4FAW_007

3D structure

PDB id

4FAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAGGUA*UACAGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98284.1

Basepair signature

cWW-tSH-tWH-tHW-tHS-cWW-cWW

Number of instances in this motif group

9

Unit IDs

4FAW|1|A|U|158
4FAW|1|A|A|159
4FAW|1|A|G|160
4FAW|1|A|G|161
4FAW|1|A|U|162
4FAW|1|A|A|163
*
4FAW|1|A|U|214
4FAW|1|A|A|215
4FAW|1|A|C|216
4FAW|1|A|A|217
4FAW|1|A|G|218
4FAW|1|A|A|219

Current chains

Chain A

Group IIC intron

Nearby chains