IL_4FAW_009

3D structure

PDB id

4FAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

4FAW|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77296.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R-cWW

Number of instances in this motif group

1

Unit IDs

4FAW|1|A|U|168
4FAW|1|A|G|169
*
4FAW|1|A|C|197
4FAW|1|A|U|198
4FAW|1|A|U|199
4FAW|1|A|U|200
4FAW|1|A|C|201
4FAW|1|A|U|202
4FAW|1|A|G|203
4FAW|1|A|C|204
4FAW|1|A|C|205
4FAW|1|A|A|206
4FAW|1|A|A|207
4FAW|1|A|A|208
4FAW|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains