IL_4FAW_011

3D structure

PDB id

4FAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAGGU*AAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03282.1

Basepair signature

cWW-tHW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4FAW|1|A|G|267
4FAW|1|A|A|268
4FAW|1|A|G|269
4FAW|1|A|G|270
4FAW|1|A|U|271
*
4FAW|1|A|A|282
4FAW|1|A|A|283
4FAW|1|A|G|284
4FAW|1|A|U|285
4FAW|1|A|C|286

Current chains

Chain A

Group IIC intron

Nearby chains