IL_4FAW_012

3D structure

PDB id

4FAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUAGUAC*GGAAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94973.1

Basepair signature

cWW-L-R-L-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4FAW|1|A|C|296
4FAW|1|A|A|297
4FAW|1|A|U|298
4FAW|1|A|A|299
4FAW|1|A|G|300
4FAW|1|A|U|301
4FAW|1|A|A|302
4FAW|1|A|C|303
*
4FAW|1|A|G|316
4FAW|1|A|G|317
4FAW|1|A|A|318
4FAW|1|A|A|319
4FAW|1|A|G|320
4FAW|1|A|G|321

Current chains

Chain A

Group IIC intron

Nearby chains