IL_4GKJ_009
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 4GKJ|1|A|U|167
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4GKJ_009 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.0605
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_12745.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4GKJ|1|A|G|142
4GKJ|1|A|A|143
4GKJ|1|A|C|144
4GKJ|1|A|A|145
4GKJ|1|A|A|146
4GKJ|1|A|C|147
*
4GKJ|1|A|G|162
4GKJ|1|A|C|163
4GKJ|1|A|U|164
4GKJ|1|A|A|165
4GKJ|1|A|A|166
4GKJ|1|A|U|167
4GKJ|1|A|C|168
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
Coloring options: