IL_4GKJ_019

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GKJ_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0655

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4GKJ|1|A|G|444
4GKJ|1|A|A|445
4GKJ|1|A|A|446
4GKJ|1|A|A|447
4GKJ|1|A|C|448
4GKJ|1|A|C|449
*
4GKJ|1|A|G|461
4GKJ|1|A|A|462
4GKJ|1|A|C|463
4GKJ|1|A|U|464
4GKJ|1|A|G|465
4GKJ|1|A|A|466
4GKJ|1|A|C|467

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16