IL_4GKJ_054

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4GKJ|1|A|C|1382, 4GKJ|1|A|A|1480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GKJ_054 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0796

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4GKJ|1|A|C|1381
4GKJ|1|A|C|1382
4GKJ|1|A|G|1383
*
4GKJ|1|A|C|1478
4GKJ|1|A|A|1479
4GKJ|1|A|A|1480
4GKJ|1|A|G|1481

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

mRNA A-site fragment