IL_4GKK_007

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4GKK|1|A|G|123, 4GKK|1|A|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GKK_007 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.0819

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4GKK|1|A|U|122
4GKK|1|A|G|123
4GKK|1|A|A|124
4GKK|1|A|C|125
*
4GKK|1|A|G|226
4GKK|1|A|G|227

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20