IL_4GMA_002

3D structure

PDB id

4GMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the adenosylcobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GUGAG*CGAGCC

Length

11 nucleotides

Bulged bases

4GMA|1|Z|A|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01375.1

Basepair signature

cWW-R-R-tWH-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4GMA|1|Z|G|86
4GMA|1|Z|U|87
4GMA|1|Z|G|88
4GMA|1|Z|A|89
4GMA|1|Z|G|90
*
4GMA|1|Z|C|153
4GMA|1|Z|G|154
4GMA|1|Z|A|155
4GMA|1|Z|G|156
4GMA|1|Z|C|157
4GMA|1|Z|C|158

Current chains

Chain Z

Adenosylcobalamin riboswitch

Nearby chains