IL_4GMA_003

3D structure

PDB id

4GMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the adenosylcobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AGGAC*GGAUGAGU

Length

13 nucleotides

Bulged bases

4GMA|1|Z|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_29549.2

Basepair signature

cWW-tSS-L-tSH-tHS-tHS-cWW

Number of instances in this motif group

36

Unit IDs

4GMA|1|Z|A|93
4GMA|1|Z|G|94
4GMA|1|Z|G|95
4GMA|1|Z|A|96
4GMA|1|Z|C|97
*
4GMA|1|Z|G|143
4GMA|1|Z|G|144
4GMA|1|Z|A|145
4GMA|1|Z|U|146
4GMA|1|Z|G|147
4GMA|1|Z|A|148
4GMA|1|Z|G|149
4GMA|1|Z|U|150

Current chains

Chain Z

Adenosylcobalamin riboswitch

Nearby chains