Motif IL_29549.2 Version IL_29549.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-5 | 1-12 | 2-3 | 2-11 | 4-11 | 5-9 | 5-10 | 5-12 | 6-9 | 6-10 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_031 | 4V9F | 0.5387 | 2 | Kink-turn | 0 | LSU rRNA | U | 1026 | G | 1027 | U | 1028 | G | 1031 | A | 1032 | C | 1033 | G | 1034 | * | C | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | ntsS | tSH | cBW | cWW | ||||||
| 2 | IL_4AOB_002 | 4AOB | 0.3253 | 1 | Kink-turn | A | SAM-I riboswitch | U | 31 | G | 32 | A | 33 | G | 35 | A | 36 | C | 37 | C | 38 | * | G | 17 | C | 18 | A | 19 | A | 20 | G | 21 | cWW | tsS | tSH | cBW | cWW | ||||||
| 3 | IL_4AOB_007 | 4AOB | 0.3253 | 1 | Kink-turn | A | SAM-I riboswitch | U | 31||||7_555 | G | 32||||7_555 | A | 33||||7_555 | G | 35||||7_555 | A | 36||||7_555 | C | 37||||7_555 | C | 38||||7_555 | * | G | 17||||7_555 | C | 18||||7_555 | A | 19||||7_555 | A | 20||||7_555 | G | 21||||7_555 | cWW | tsS | tSH | cBW | cWW | ||||||
| 4 | IL_4V9F_004 | 4V9F | 0.3160 | 1 | Kink-turn | 0 | LSU rRNA | C | 93 | G | 94 | A | 95 | G | 97 | A | 98 | A | 99 | C | 100 | * | G | 77 | G | 78 | G | 79 | A | 80 | G | 81 | cWW | ntsS | tSH | ntHS | tHS | cWW | |||||
| 5 | IL_4Y4O_182 | 4Y4O | 0.3743 | 1 | Kink-turn | 2A | LSU rRNA | C | 97 | G | 98 | U | 99 | G | 102 | A | 103 | U | 104 | C | 105 | * | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | cWW | ntsS | tSH | tSs | tHS | cWW | |||||
| 6 | IL_4GXY_005 | 4GXY | 0.3423 | 1 | Kink-turn | A | Adenosylcobalamin riboswitch | C | 139 | G | 140 | A | 141 | G | 143 | A | 144 | U | 145 | C | 146 | * | G | 82 | G | 83 | G | 84 | A | 85 | G | 86 | ncsS | cWW | ntsS | tSH | tHS | cWW | |||||
| 7 | IL_1T0K_001 | 1T0K | 0.3532 | 1 | Kink-turn | D+C | RNA (16-mer) | C | 54 | A | 55 | G | 56 | G | 58 | A | 59 | U | 60 | G | 61 | * | C | 9 | G | 10 | G | 11 | A | 12 | G | 13 | cWW | tsS | ntSH | ntHS | cWW | ||||||
| 8 | IL_5Y7M_008 | 5Y7M | 0.2334 | 1 | Kink-turn | D | RNA (52-MER) | A | 17 | G | 18 | A | 19 | G | 21 | A | 22 | U | 23 | C | 24 | * | G | 29 | G | 30 | G | 31 | A | 32 | U | 33 | cWW | tsS | tSH | ntHS | ntHS | cWW | |||||
| 9 | IL_4KQY_007 | 4KQY | 0.2538 | 1 | Kink-turn | A | SAM-I riboswitch | C | 31||||4_555 | G | 32||||4_555 | A | 33||||4_555 | G | 35||||4_555 | A | 36||||4_555 | A | 37||||4_555 | G | 38||||4_555 | * | C | 17||||4_555 | A | 18||||4_555 | G | 19||||4_555 | A | 20||||4_555 | G | 21||||4_555 | cWW | tsS | ntSH | ntHS | cWW | ||||||
| 10 | IL_4KQY_002 | 4KQY | 0.2538 | 1 | Kink-turn | A | SAM-I riboswitch | C | 31 | G | 32 | A | 33 | G | 35 | A | 36 | A | 37 | G | 38 | * | C | 17 | A | 18 | G | 19 | A | 20 | G | 21 | cWW | tsS | ntSH | ntHS | cWW | ||||||
| 11 | IL_5G4U_005 | 5G4U | 0.3101 | 1 | Kink-turn | I+J | HMKT-7 | C | 3 | G | 4 | A | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 13 | U | 14 | G | 15 | A | 16 | G | 17 | cWW | tsS | tSH | tHS | ncWw | cWW | |||||
| 12 | IL_5G4U_006 | 5G4U | 0.2778 | 1 | Kink-turn | J+I | HMKT-7 | C | 3 | G | 4 | A | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 13 | U | 14 | G | 15 | A | 16 | G | 17 | cWW | ntsS | tSH | tHS | ncWw | cWW | |||||
| 13 | IL_4C4W_002 | 4C4W | 0.2513 | 1 | Kink-turn | H | TSKT-23 | U | 26 | G | 27 | A | 28 | G | 30 | A | 31 | C | 32 | C | 33 | * | G | 3 | C | 4 | A | 5 | A | 6 | G | 7 | cWW | ntsS | tSH | tHS | ncBW | cWW | |||||
| 14 | IL_5G4T_001 | 5G4T | 0.0000 | 1 | Kink-turn | A+B | HMKT-7 | C | 3||||10_667 | G | 4||||10_667 | A | 5||||10_667 | G | 7||||10_667 | A | 8||||10_667 | A | 9||||10_667 | C | 10||||10_667 | * | G | 13||||10_667 | G | 14||||10_667 | G | 15||||10_667 | A | 16||||10_667 | G | 17||||10_667 | cWW | ntsS | tSH | tHS | tHS | cWW | |||||
| 15 | IL_5G4T_002 | 5G4T | 0.0000 | 1 | Kink-turn | A+B | HMKT-7 | C | 3 | G | 4 | A | 5 | G | 7 | A | 8 | A | 9 | C | 10 | * | G | 13 | G | 14 | G | 15 | A | 16 | G | 17 | cWW | ntsS | tSH | tHS | tHS | cWW | |||||
| 16 | IL_5FJC_002 | 5FJC | 0.1038 | 1 | Kink-turn | A | SAM-I riboswitch | C | 31 | G | 32 | A | 33||A | G | 35 | A | 36 | A | 37 | C | 38 | * | G | 17 | G | 18 | G | 19 | A | 20 | G | 21 | cWW | tsS | tSH | tHS | tHS | cWW | |||||
| 17 | IL_3U4M_004 | 3U4M | 0.1322 | 1 | Kink-turn | B | LSU rRNA | C | 2129 | U | 2130 | G | 2131 | G | 2133 | A | 2134 | A | 2135 | C | 2136 | * | G | 2155 | G | 2156 | G | 2157 | A | 2158 | G | 2159 | cWW | tsS | tSH | tHS | tHS | cWW | |||||
| 18 | IL_3V7E_002 | 3V7E | 0.1638 | 1 | Kink-turn | C | SAM-I riboswitch | C | 31 | G | 32 | A | 33 | G | 35 | A | 36 | A | 37 | A | 38 | * | U | 17 | G | 18 | G | 19 | A | 20 | G | 21 | cWW | tsS | tSH | tHS | cWW | ||||||
| 19 | IL_2YGH_002 | 2YGH | 0.1494 | 1 | Kink-turn | A | SAM-I riboswitch | C | 31 | G | 32 | A | 33 | G | 35 | A | 36 | A | 37 | A | 38 | * | U | 17 | G | 18 | A | 19 | A | 20 | G | 21 | cWW | ntsS | tSH | ntHS | tHS | cWW | |||||
| 20 | IL_2YGH_006 | 2YGH | 0.1494 | 1 | Kink-turn | A | SAM-I riboswitch | C | 31||||8_554 | G | 32||||8_554 | A | 33||||8_554 | G | 35||||8_554 | A | 36||||8_554 | A | 37||||8_554 | A | 38||||8_554 | * | U | 17||||8_554 | G | 18||||8_554 | A | 19||||8_554 | A | 20||||8_554 | G | 21||||8_554 | cWW | ntsS | tSH | ntHS | tHS | cWW | |||||
| 21 | IL_4Y4O_223 | 4Y4O | 0.2040 | 1 | Kink-turn | 2A | LSU rRNA | C | 1208 | G | 1209 | A | 1210 | G | 1212 | A | 1213 | A | 1214 | G | 1215 | * | U | 1234 | G | 1235 | G | 1236 | A | 1237 | G | 1238 | cWW | tSH | tHS | tHS | cWW | ||||||
| 22 | IL_5J7L_288 | 5J7L | 0.2331 | 1 | Kink-turn | DA | LSU rRNA | C | 1208 | U | 1209 | G | 1210 | G | 1212 | A | 1213 | A | 1214 | G | 1215 | * | U | 1234 | G | 1235 | G | 1236 | A | 1237 | G | 1238 | cWW | tsS | tSH | tHS | tHS | cWW | |||||
| 23 | IL_5TBW_059 | 5TBW | 0.2612 | 1 | Kink-turn | 1 | LSU rRNA | U | 1388 | G | 1389 | A | 1390 | G | 1392 | A | 1393 | A | 1394 | G | 1395 | * | U | 1415 | C | 1416 | G | 1417 | A | 1418 | A | 1419 | cWW | tsS | tSH | tHS | tHS | cWW | |||||
| 24 | IL_4WF9_046 | 4WF9 | 0.4338 | 1 | Kink-turn | X | LSU rRNA | C | 1246 | G | 1247 | U | 1248 | G | 1250 | A | 1251 | A | 1252 | G | 1253 | * | U | 1272 | G | 1273 | G | 1274 | A | 1275 | G | 1276 | cWW | ntHS | tHS | cWW | |||||||
| 25 | IL_4IOA_045 | 4IOA | 0.3433 | 1 | Kink-turn | X | LSU rRNA | C | 1221 | G | 1222 | G | 1223 | G | 1225 | A | 1226 | A | 1227 | G | 1228 | * | U | 1247 | G | 1248 | G | 1249 | A | 1250 | G | 1251 | cWW | tSH | tHS | tHS | cWW | ||||||
| 26 | IL_4V8P_220 | 4V8P | 0.3853 | 1 | Kink-turn | D1 | LSU rRNA | C | 1414 | C | 1415 | U | 1416 | G | 1418 | A | 1419 | A | 1420 | G | 1421 | * | U | 1441 | G | 1442 | G | 1443 | A | 1444 | G | 1445 | cWW | ntsS | tSH | ntHS | tHS | cWW | |||||
| 27 | IL_4V9F_048 | 4V9F | 0.3551 | 1 | Kink-turn | 0 | LSU rRNA | G | 1312 | A | 1313 | U | 1314 | G | 1316 | A | 1317 | A | 1318 | G | 1319 | * | U | 1338 | G | 1339 | G | 1340 | A | 1341 | C | 1342 | cWW | ntsS | tSH | tHS | tHS | cWW | |||||
| 28 | IL_4WF9_004 | 4WF9 | 0.5124 | 1 | Kink-turn | X | LSU rRNA | C | 97 | U | 98 | U | 99 | G | 101 | A | 102 | U | 103 | C | 104 | * | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | cWW | ntsS | ntSH | ntSs | tHS | cWW | |||||
| 29 | IL_4GMA_003 | 4GMA | 0.4722 | 1 | Kink-turn | Z | Adenosylcobalamin riboswitch | G | 143 | G | 144 | A | 145 | G | 147 | A | 148 | G | 149 | U | 150 | * | A | 93 | G | 94 | G | 95 | A | 96 | C | 97 | ncsS | cWW | ntsS | tSH | ntSs | tHS | ncWW | ||||
| 30 | IL_4IOA_004 | 4IOA | 0.4627 | 1 | Kink-turn | X | LSU rRNA | C | 96 | U | 97 | U | 98 | G | 100 | A | 101 | C | 102 | U | 103 | * | A | 80 | C | 81 | G | 82 | A | 83 | G | 84 | cWW | tsS | tSH | cBW | cWW | ||||||
| 31 | IL_4V88_434 | 4V88 | 0.4978 | 1 | Kink-turn | A6 | SSU rRNA | C | 910 | U | 911 | U | 912 | G | 914 | A | 915 | U | 916 | U | 917 | * | G | 895 | U | 896 | C | 897 | A | 898 | G | 899 | ncsS | cWW | ntsS | tSH | tSs | ncWW | |||||
| 32 | IL_4V88_402 | 4V88 | 0.7474 | 2 | Kink-turn with non-sequential stacking | A6 | SSU rRNA | U | 348 | U | 349 | U | 350 | A | 352 | A | 353 | C | 354 | G | 355 | * | U | 311 | A | 312 | C | 314 | A | 315 | A | 316 | ncsS | cWW | tsS | ntSH | tHW | cwW | cWW | ||||
| 33 | IL_4V5O_098 | 4V5O | 0.7448 | 2 | Kink-turn | BA | SSU rRNA | C | 339 | A | 340 | G | 341 | C | 343 | A | 344 | C | 345 | G | 346 | * | U | 302 | A | 303 | C | 305 | A | 306 | G | 307 | cWW | ntsS | ncBW | cwW | ncWW | ||||||
| 34 | IL_5J7L_014 | 5J7L | 0.6945 | 2 | Kink-turn with non-sequential stacking | AA | SSU rRNA | C | 277 | G | 278 | A | 279 | G | 281 | A | 282 | U | 283 | C | 284 | * | G | 242 | A | 243 | U | 245 | A | 246 | G | 247 | ncsS | cWW | ncSH | tSH | tHW | cWw | cWW | ||||
| 35 | IL_4LFB_011 | 4LFB | 0.6579 | 2 | Kink-turn with non-sequential stacking | A | SSU rRNA | C | 277 | G | 278 | A | 279 | G | 281 | A | 282 | C | 283 | G | 284 | * | C | 242 | A | 243 | C | 245 | A | 246 | G | 247 | ncsS | cWW | ntsS | tSH | tHW | cwW | cWW | ||||
| 36 | IL_3RW6_002 | 3RW6 | 0.6636 | 4 | Kink-turn with non-sequential stacking | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | C | 43 | A | 44 | A | 45 | G | 47 | A | 48 | C | 49 | G | 50 | * | U | 11 | A | 12 | C | 16 | A | 17 | G | 18 | ncsS | cWW | tsS | tSH | tHW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGAAC*GGGAG | 4 |
| UGAUGACC*GCAAG | 3 |
| CGACGAAG*CAGAG | 2 |
| CGAAGAUC*GUGAG | 2 |
| CGACGAAA*UGAAG | 2 |
| UGUUUGACG*CCGAG | 1 |
| CGUGGAUC*GGGAG | 1 |
| CGAGGAUC*GGGAG | 1 |
| CAGAGAUG*CGGAG | 1 |
| AGACGAUC*GGGAU | 1 |
| CUGUGAAC*GGGAG | 1 |
| CGAUGAAA*UGGAG | 1 |
| CGAUGAAG*UGGAG | 1 |
| CUGCGAAG*UGGAG | 1 |
| UGACGAAG*UCGAA | 1 |
| CGUUGAAG*UGGAG | 1 |
| CGGAGAAG*UGGAG | 1 |
| CCUAGAAG*UGGAG | 1 |
| GAUGGAAG*UGGAC | 1 |
| CUUUGAUC*GGGAG | 1 |
| GGAUGAGU*AGGAC | 1 |
| CUUUGACU*ACGAG | 1 |
| CUUGGAUU*GUCAG | 1 |
| UUUCAACG*UAUCAA | 1 |
| CAGUCACG*UAUCAG | 1 |
| CGACGAUC*GAUUAG | 1 |
| CGACGACG*CAUCAG | 1 |
| CAAUGACG*UAAGACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAA*GGA | 4 |
| GAUGAC*CAA | 3 |
| GACGAA*AGA | 2 |
| GAAGAU*UGA | 2 |
| GAUGAA*GGA | 2 |
| GACGAA*GAA | 2 |
| GUUUGAC*CGA | 1 |
| GUGGAU*GGA | 1 |
| GAGGAU*GGA | 1 |
| AGAGAU*GGA | 1 |
| GACGAU*GGA | 1 |
| UGUGAA*GGA | 1 |
| UGCGAA*GGA | 1 |
| GACGAA*CGA | 1 |
| GUUGAA*GGA | 1 |
| GGAGAA*GGA | 1 |
| CUAGAA*GGA | 1 |
| AUGGAA*GGA | 1 |
| UUUGAU*GGA | 1 |
| GAUGAG*GGA | 1 |
| UUUGAC*CGA | 1 |
| UUGGAU*UCA | 1 |
| UUCAAC*AUCA | 1 |
| AGUCAC*AUCA | 1 |
| GACGAU*AUUA | 1 |
| GACGAC*AUCA | 1 |
| AAUGAC*AAGACA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (32)
- Kink-turn with non-sequential stacking (4)
- Basepair signature
- cWW-tSS-L-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.43 | Max 0.78
Coloring options: