#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 121-51-122-32-114-115-95-105-126-96-107-8
1 IL_4V9F_0314V9F0.53872Kink-turn0 LSU rRNAU1026G1027U1028G1031A1032C1033G1034*C936C937G938A939G940cWWntsStSHcBWcWW
2 IL_4AOB_0024AOB0.32531Kink-turnA SAM-I riboswitchU31G32A33G35A36C37C38*G17C18A19A20G21cWWtsStSHcBWcWW
3 IL_4AOB_0074AOB0.32531Kink-turnA SAM-I riboswitchU31||||7_555G32||||7_555A33||||7_555G35||||7_555A36||||7_555C37||||7_555C38||||7_555*G17||||7_555C18||||7_555A19||||7_555A20||||7_555G21||||7_555cWWtsStSHcBWcWW
4 IL_4V9F_0044V9F0.31601Kink-turn0 LSU rRNAC93G94A95G97A98A99C100*G77G78G79A80G81cWWntsStSHntHStHScWW
5 IL_4Y4O_1824Y4O0.37431Kink-turn2A LSU rRNAC97G98U99G102A103U104C105*G81G82G83A84G85cWWntsStSHtSstHScWW
6 IL_4GXY_0054GXY0.34231Kink-turnAAdenosylcobalamin riboswitchC139G140A141G143A144U145C146*G82G83G84A85G86ncsScWWntsStSHtHScWW
7 IL_1T0K_0011T0K0.35321Kink-turnD+CRNA (16-mer)C54A55G56G58A59U60G61*C9G10G11A12G13cWWtsSntSHntHScWW
8 IL_5Y7M_0085Y7M0.23341Kink-turnDRNA (52-MER)A17G18A19G21A22U23C24*G29G30G31A32U33cWWtsStSHntHSntHScWW
9 IL_4KQY_0074KQY0.25381Kink-turnA SAM-I riboswitchC31||||4_555G32||||4_555A33||||4_555G35||||4_555A36||||4_555A37||||4_555G38||||4_555*C17||||4_555A18||||4_555G19||||4_555A20||||4_555G21||||4_555cWWtsSntSHntHScWW
10 IL_4KQY_0024KQY0.25381Kink-turnA SAM-I riboswitchC31G32A33G35A36A37G38*C17A18G19A20G21cWWtsSntSHntHScWW
11 IL_5G4U_0055G4U0.31011Kink-turnI+JHMKT-7C3G4A5G7A8U9C10*G13U14G15A16G17cWWtsStSHtHSncWwcWW
12 IL_5G4U_0065G4U0.27781Kink-turnJ+IHMKT-7C3G4A5G7A8U9C10*G13U14G15A16G17cWWntsStSHtHSncWwcWW
13 IL_4C4W_0024C4W0.25131Kink-turnHTSKT-23U26G27A28G30A31C32C33*G3C4A5A6G7cWWntsStSHtHSncBWcWW
14 IL_5G4T_0015G4T0.00001Kink-turnA+BHMKT-7C3||||10_667G4||||10_667A5||||10_667G7||||10_667A8||||10_667A9||||10_667C10||||10_667*G13||||10_667G14||||10_667G15||||10_667A16||||10_667G17||||10_667cWWntsStSHtHStHScWW
15 IL_5G4T_0025G4T0.00001Kink-turnA+BHMKT-7C3G4A5G7A8A9C10*G13G14G15A16G17cWWntsStSHtHStHScWW
16 IL_5FJC_0025FJC0.10381Kink-turnA SAM-I riboswitchC31G32A33||AG35A36A37C38*G17G18G19A20G21cWWtsStSHtHStHScWW
17 IL_3U4M_0043U4M0.13221Kink-turnB LSU rRNAC2129U2130G2131G2133A2134A2135C2136*G2155G2156G2157A2158G2159cWWtsStSHtHStHScWW
18 IL_3V7E_0023V7E0.16381Kink-turnC SAM-I riboswitchC31G32A33G35A36A37A38*U17G18G19A20G21cWWtsStSHtHScWW
19 IL_2YGH_0022YGH0.14941Kink-turnA SAM-I riboswitchC31G32A33G35A36A37A38*U17G18A19A20G21cWWntsStSHntHStHScWW
20 IL_2YGH_0062YGH0.14941Kink-turnA SAM-I riboswitchC31||||8_554G32||||8_554A33||||8_554G35||||8_554A36||||8_554A37||||8_554A38||||8_554*U17||||8_554G18||||8_554A19||||8_554A20||||8_554G21||||8_554cWWntsStSHntHStHScWW
21 IL_4Y4O_2234Y4O0.20401Kink-turn2A LSU rRNAC1208G1209A1210G1212A1213A1214G1215*U1234G1235G1236A1237G1238cWWtSHtHStHScWW
22 IL_5J7L_2885J7L0.23311Kink-turnDA LSU rRNAC1208U1209G1210G1212A1213A1214G1215*U1234G1235G1236A1237G1238cWWtsStSHtHStHScWW
23 IL_5TBW_0595TBW0.26121Kink-turn1 LSU rRNAU1388G1389A1390G1392A1393A1394G1395*U1415C1416G1417A1418A1419cWWtsStSHtHStHScWW
24 IL_4WF9_0464WF90.43381Kink-turnX LSU rRNAC1246G1247U1248G1250A1251A1252G1253*U1272G1273G1274A1275G1276cWWntHStHScWW
25 IL_4IOA_0454IOA0.34331Kink-turnX LSU rRNAC1221G1222G1223G1225A1226A1227G1228*U1247G1248G1249A1250G1251cWWtSHtHStHScWW
26 IL_4V8P_2204V8P0.38531Kink-turnD1 LSU rRNAC1414C1415U1416G1418A1419A1420G1421*U1441G1442G1443A1444G1445cWWntsStSHntHStHScWW
27 IL_4V9F_0484V9F0.35511Kink-turn0 LSU rRNAG1312A1313U1314G1316A1317A1318G1319*U1338G1339G1340A1341C1342cWWntsStSHtHStHScWW
28 IL_4WF9_0044WF90.51241Kink-turnX LSU rRNAC97U98U99G101A102U103C104*G81G82G83A84G85cWWntsSntSHntSstHScWW
29 IL_4GMA_0034GMA0.47221Kink-turnZAdenosylcobalamin riboswitchG143G144A145G147A148G149U150*A93G94G95A96C97ncsScWWntsStSHntSstHSncWW
30 IL_4IOA_0044IOA0.46271Kink-turnX LSU rRNAC96U97U98G100A101C102U103*A80C81G82A83G84cWWtsStSHcBWcWW
31 IL_4V88_4344V880.49781Kink-turnA6 SSU rRNAC910U911U912G914A915U916U917*G895U896C897A898G899ncsScWWntsStSHtSsncWW
32 IL_4V88_4024V880.74742Kink-turn with non-sequential stackingA6 SSU rRNAU348U349U350A352A353C354G355*U311A312C314A315A316ncsScWWtsSntSHtHWcwWcWW
33 IL_4V5O_0984V5O0.74482Kink-turnBA SSU rRNAC339A340G341C343A344C345G346*U302A303C305A306G307cWWntsSncBWcwWncWW
34 IL_5J7L_0145J7L0.69452Kink-turn with non-sequential stackingAA SSU rRNAC277G278A279G281A282U283C284*G242A243U245A246G247ncsScWWncSHtSHtHWcWwcWW
35 IL_4LFB_0114LFB0.65792Kink-turn with non-sequential stackingA SSU rRNAC277G278A279G281A282C283G284*C242A243C245A246G247ncsScWWntsStSHtHWcwWcWW
36 IL_3RW6_0023RW60.66364Kink-turn with non-sequential stackingHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC43A44A45G47A48C49G50*U11A12C16A17G18ncsScWWtsStSHtHWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAGAAC*GGGAG4
UGAUGACC*GCAAG3
CGACGAAG*CAGAG2
CGAAGAUC*GUGAG2
CGACGAAA*UGAAG2
UGUUUGACG*CCGAG1
CGUGGAUC*GGGAG1
CGAGGAUC*GGGAG1
CAGAGAUG*CGGAG1
AGACGAUC*GGGAU1
CUGUGAAC*GGGAG1
CGAUGAAA*UGGAG1
CGAUGAAG*UGGAG1
CUGCGAAG*UGGAG1
UGACGAAG*UCGAA1
CGUUGAAG*UGGAG1
CGGAGAAG*UGGAG1
CCUAGAAG*UGGAG1
GAUGGAAG*UGGAC1
CUUUGAUC*GGGAG1
GGAUGAGU*AGGAC1
CUUUGACU*ACGAG1
CUUGGAUU*GUCAG1
UUUCAACG*UAUCAA1
CAGUCACG*UAUCAG1
CGACGAUC*GAUUAG1
CGACGACG*CAUCAG1
CAAUGACG*UAAGACAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAGAA*GGA4
GAUGAC*CAA3
GACGAA*AGA2
GAAGAU*UGA2
GAUGAA*GGA2
GACGAA*GAA2
GUUUGAC*CGA1
GUGGAU*GGA1
GAGGAU*GGA1
AGAGAU*GGA1
GACGAU*GGA1
UGUGAA*GGA1
UGCGAA*GGA1
GACGAA*CGA1
GUUGAA*GGA1
GGAGAA*GGA1
CUAGAA*GGA1
AUGGAA*GGA1
UUUGAU*GGA1
GAUGAG*GGA1
UUUGAC*CGA1
UUGGAU*UCA1
UUCAAC*AUCA1
AGUCAC*AUCA1
GACGAU*AUUA1
GACGAC*AUCA1
AAUGAC*AAGACA1

Release history

Release3.33.43.53.63.73.83.93.103.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-19
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Kink-turn (32)
  • Kink-turn with non-sequential stacking (4)
  • Basepair signature
    cWW-tSS-L-tSH-tHS-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.43 | Max 0.78
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