IL_4GMA_004

3D structure

PDB id

4GMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the adenosylcobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGAAGC*GUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38680.1

Basepair signature

cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4GMA|1|Z|C|97
4GMA|1|Z|G|98
4GMA|1|Z|A|99
4GMA|1|Z|A|100
4GMA|1|Z|G|101
4GMA|1|Z|C|102
*
4GMA|1|Z|G|138
4GMA|1|Z|U|139
4GMA|1|Z|G|140
4GMA|1|Z|G|141
4GMA|1|Z|A|142
4GMA|1|Z|G|143

Current chains

Chain Z

Adenosylcobalamin riboswitch

Nearby chains