IL_4GMA_009

3D structure

PDB id

4GMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the adenosylcobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GAGGAC*GGAUGAGUC

Length

15 nucleotides

Bulged bases

4GMA|1|Z|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GMA_009 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.2234

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4GMA|1|Z|G|92
4GMA|1|Z|A|93
4GMA|1|Z|G|94
4GMA|1|Z|G|95
4GMA|1|Z|A|96
4GMA|1|Z|C|97
*
4GMA|1|Z|G|143
4GMA|1|Z|G|144
4GMA|1|Z|A|145
4GMA|1|Z|U|146
4GMA|1|Z|G|147
4GMA|1|Z|A|148
4GMA|1|Z|G|149
4GMA|1|Z|U|150
4GMA|1|Z|C|151

Current chains

Chain Z

Adenosylcobalamin riboswitch

Nearby chains