IL_4GXY_001

3D structure

PDB id

4GXY (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GXY_001 not in the Motif Atlas

Geometric match to IL_3SJ2_001

Geometric discrepancy: 0.1409

The information below is about IL_3SJ2_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

4GXY|1|A|G|4
4GXY|1|A|G|5
4GXY|1|A|C|6
*
4GXY|1|A|G|167
4GXY|1|A|C|168
4GXY|1|A|C|169

Current chains

Chain A

Adenosylcobalamin riboswitch

Nearby chains