4GXY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4GXY_002 | 1/A/49:57 | T-loop with 2 stacked bulged bases | ||
| HL_4GXY_003 | 1/A/65:71 | Pseudoknot geometry |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4GXY_001 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4GXY_004 | 1/A/76:80, 1/A/148:153 | UAA/GAN related | ||
| IL_4GXY_005 | 1/A/82:86, 1/A/139:146 | Kink-turn | ||
| IL_4GXY_008 | 1/A/95:103, 1/A/128:130 | No text annotation | ||
| IL_4GXY_009 | 1/A/105:107, 1/A/122:126 | Major groove minor groove platform with extra cWW |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4GXY_001 | Isolated cWH basepair | ||
| IL_4GXY_002 | Isolated non-canonical cWW pair | ||
| IL_4GXY_003 | Tandem non-canonical cWW pairs | ||
| IL_4GXY_006 | Isolated non-canonical cWW pair | ||
| IL_4GXY_007 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4GXY_001 | 1/A/10:12, 1/A/33:39, 1/A/162:163 | No text annotation | geometric J3_1MFQ_002 J3_77820.1 | |
| J4_4GXY_001 | 1/A/40:45, 1/A/61:64, 1/A/72:74, 1/A/155:161 | Cobalamin riboswitch junction |
Problematic loops
No problematic loops
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