IL_4GXY_007

3D structure

PDB id

4GXY (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCU,AGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GXY_007 not in the Motif Atlas

Geometric match to IL_4V88_419

Geometric discrepancy: 0.2173

The information below is about IL_4V88_419

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4GXY|1|A|C|92
4GXY|1|A|C|93
4GXY|1|A|U|94
*
4GXY|1|A|A|131
4GXY|1|A|G|132
4GXY|1|A|G|133

Current chains

Chain A

Adenosylcobalamin riboswitch

Nearby chains