IL_4IO9_001

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_001 not in the Motif Atlas

Homologous match to IL_4WF9_001

Geometric discrepancy: 0.0565

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

4IO9|1|X|G|24
4IO9|1|X|U|25
4IO9|1|X|G|26
4IO9|1|X|G|27
4IO9|1|X|A|28
4IO9|1|X|U|29
4IO9|1|X|G|30
*
4IO9|1|X|C|520
4IO9|1|X|U|521
4IO9|1|X|G|522
4IO9|1|X|A|523
4IO9|1|X|A|524
4IO9|1|X|A|525
4IO9|1|X|C|526

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32