IL_4IO9_023

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_023 not in the Motif Atlas

Geometric match to IL_7A0S_023

Geometric discrepancy: 0.2526

The information below is about IL_7A0S_023

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4IO9|1|X|U|857
4IO9|1|X|G|858
4IO9|1|X|U|859
4IO9|1|X|U|860
*
4IO9|1|X|A|944
4IO9|1|X|G|945

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30