IL_4IO9_051

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

4IO9|1|X|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_051 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.1106

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

4IO9|1|X|G|1332
4IO9|1|X|G|1333
4IO9|1|X|A|1334
4IO9|1|X|A|1335
4IO9|1|X|G|1336
*
4IO9|1|X|C|1344
4IO9|1|X|G|1345
4IO9|1|X|C|1346

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L23