IL_4IO9_055

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAUG*CUAAA

Length

10 nucleotides

Bulged bases

4IO9|1|X|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_055 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.2003

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

4IO9|1|X|U|1431
4IO9|1|X|G|1432
4IO9|1|X|A|1433
4IO9|1|X|U|1434
4IO9|1|X|G|1435
*
4IO9|1|X|C|1593
4IO9|1|X|U|1594
4IO9|1|X|A|1595
4IO9|1|X|A|1596
4IO9|1|X|A|1597

Current chains

Chain X

23S ribosomal RNA

Nearby chains