IL_4IO9_057

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAU*AAACG

Length

9 nucleotides

Bulged bases

4IO9|1|X|C|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_057 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1094

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4IO9|1|X|C|1451
4IO9|1|X|U|1452
4IO9|1|X|A|1453
4IO9|1|X|U|1454
*
4IO9|1|X|A|1567
4IO9|1|X|A|1568
4IO9|1|X|A|1569
4IO9|1|X|C|1570
4IO9|1|X|G|1571

Current chains

Chain X

23S ribosomal RNA

Nearby chains