IL_4IO9_072

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

4IO9|1|X|C|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_072 not in the Motif Atlas

Homologous match to IL_7A0S_066

Geometric discrepancy: 0.1222

The information below is about IL_7A0S_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

4IO9|1|X|C|1829
4IO9|1|X|C|1830
4IO9|1|X|G|1831
4IO9|1|X|G|1832
*
4IO9|1|X|C|1885
4IO9|1|X|G|1886

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2