IL_4IO9_076

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGGAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_076 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.1408

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4IO9|1|X|U|1848
4IO9|1|X|G|1849
4IO9|1|X|G|1850
4IO9|1|X|A|1851
4IO9|1|X|G|1852
*
4IO9|1|X|C|1865
4IO9|1|X|G|1866
4IO9|1|X|A|1867
4IO9|1|X|A|1868
4IO9|1|X|A|1869

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L28