IL_4IO9_101

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_101 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0635

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4IO9|1|X|C|2631
4IO9|1|X|U|2632
4IO9|1|X|A|2633
4IO9|1|X|G|2634
4IO9|1|X|U|2635
4IO9|1|X|A|2636
4IO9|1|X|C|2637
*
4IO9|1|X|G|2642
4IO9|1|X|G|2643
4IO9|1|X|A|2644
4IO9|1|X|C|2645
4IO9|1|X|C|2646
4IO9|1|X|G|2647

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L14