IL_4IO9_105
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 4IO9|1|X|A|2745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_105 not in the Motif Atlas
- Homologous match to IL_7A0S_098
- Geometric discrepancy: 0.0512
- The information below is about IL_7A0S_098
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
4IO9|1|X|G|2717
4IO9|1|X|A|2718
4IO9|1|X|U|2719
4IO9|1|X|A|2720
4IO9|1|X|A|2721
4IO9|1|X|C|2722
*
4IO9|1|X|G|2742
4IO9|1|X|G|2743
4IO9|1|X|A|2744
4IO9|1|X|A|2745
4IO9|1|X|G|2746
4IO9|1|X|C|2747
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain E
- 50S ribosomal protein L6
- Chain G
- 50S ribosomal protein L13
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