IL_4IO9_108
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCACG*UUCAG
- Length
- 11 nucleotides
- Bulged bases
- 4IO9|1|X|C|2842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_108 not in the Motif Atlas
- Homologous match to IL_7A0S_101
- Geometric discrepancy: 0.0659
- The information below is about IL_7A0S_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.1
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4IO9|1|X|U|2822
4IO9|1|X|G|2823
4IO9|1|X|C|2824
4IO9|1|X|A|2825
4IO9|1|X|C|2826
4IO9|1|X|G|2827
*
4IO9|1|X|U|2840
4IO9|1|X|U|2841
4IO9|1|X|C|2842
4IO9|1|X|A|2843
4IO9|1|X|G|2844
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
Coloring options: