IL_4IO9_121
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAACUUUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_121 not in the Motif Atlas
- Homologous match to IL_7A0S_109
- Geometric discrepancy: 0.0641
- The information below is about IL_7A0S_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
4IO9|1|X|G|1683
4IO9|1|X|G|1684
4IO9|1|X|A|1685
4IO9|1|X|A|1686
4IO9|1|X|C|1687
4IO9|1|X|U|1688
4IO9|1|X|U|1689
4IO9|1|X|U|1690
4IO9|1|X|G|1691
*
4IO9|1|X|C|1973
4IO9|1|X|U|1974
4IO9|1|X|G|1975
4IO9|1|X|U|1976
4IO9|1|X|C|1977
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L14
Coloring options: