IL_4IOA_009

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAC*GAGUGAAAGAGAAC

Length

18 nucleotides

Bulged bases

4IOA|1|X|G|514, 4IOA|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.3

Basepair signature

cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4IOA|1|X|G|492
4IOA|1|X|A|493
4IOA|1|X|A|494
4IOA|1|X|C|495
*
4IOA|1|X|G|506
4IOA|1|X|A|507
4IOA|1|X|G|508
4IOA|1|X|U|509
4IOA|1|X|G|510
4IOA|1|X|A|511
4IOA|1|X|A|512
4IOA|1|X|A|513
4IOA|1|X|G|514
4IOA|1|X|A|515
4IOA|1|X|G|516
4IOA|1|X|A|517
4IOA|1|X|A|518
4IOA|1|X|C|519

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24