IL_4IOA_014

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4IOA|1|X|G|814, 4IOA|1|X|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.3

Basepair signature

cWW-R-tHW-tHW-tWW-cWW

Number of instances in this motif group

6

Unit IDs

4IOA|1|X|G|687
4IOA|1|X|A|688
4IOA|1|X|A|689
4IOA|1|X|A|690
4IOA|1|X|C|691
*
4IOA|1|X|G|812
4IOA|1|X|A|813
4IOA|1|X|G|814
4IOA|1|X|A|815
4IOA|1|X|U|816
4IOA|1|X|A|817
4IOA|1|X|G|818
4IOA|1|X|C|819

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15