IL_4IOA_028

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.1

Basepair signature

cWW-tWH-cSH-L-cWS-cWW

Number of instances in this motif group

22

Unit IDs

4IOA|1|X|G|877
4IOA|1|X|C|878
4IOA|1|X|A|879
4IOA|1|X|C|880
4IOA|1|X|U|881
*
4IOA|1|X|A|921
4IOA|1|X|A|922
4IOA|1|X|A|923
4IOA|1|X|C|924

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25

Chain Y

5S ribosomal RNA; 5S rRNA