IL_4IOA_032

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4IOA|1|X|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_53523.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

18

Unit IDs

4IOA|1|X|C|1009
4IOA|1|X|U|1010
4IOA|1|X|A|1011
4IOA|1|X|A|1012
4IOA|1|X|G|1013
*
4IOA|1|X|C|1164
4IOA|1|X|G|1165
4IOA|1|X|A|1166
4IOA|1|X|A|1167
4IOA|1|X|G|1168

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain W

50S ribosomal protein L30

Chain Y

5S ribosomal RNA; 5S rRNA