IL_4IOA_045

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4IOA|1|X|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_29549.6

Basepair signature

cWW-tSH-tSH-tHS-tSS-R-cWW

Number of instances in this motif group

35

Unit IDs

4IOA|1|X|C|1221
4IOA|1|X|G|1222
4IOA|1|X|G|1223
4IOA|1|X|A|1224
4IOA|1|X|G|1225
4IOA|1|X|A|1226
4IOA|1|X|A|1227
4IOA|1|X|G|1228
*
4IOA|1|X|U|1247
4IOA|1|X|G|1248
4IOA|1|X|G|1249
4IOA|1|X|A|1250
4IOA|1|X|G|1251

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22