IL_4IOA_052

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48918.3

Basepair signature

cWW-tSH-tSH-tHS-tSS-R-cWW

Number of instances in this motif group

4

Unit IDs

4IOA|1|X|U|1426
4IOA|1|X|G|1427
4IOA|1|X|G|1428
4IOA|1|X|A|1429
4IOA|1|X|G|1430
*
4IOA|1|X|C|1598
4IOA|1|X|G|1599
4IOA|1|X|U|1600
4IOA|1|X|U|1601
4IOA|1|X|G|1602
4IOA|1|X|A|1603
4IOA|1|X|A|1604
4IOA|1|X|A|1605

Current chains

Chain X

23S ribosomal RNA

Nearby chains